Hi.
Coming from Zimbra. There was a single certificate for my 5 domains.
For Mailcow, I’m able to get a certificate for the first domain, which is also a HOSTNAME, but it fails for the other 4 domains.

According to Mailcow DNS checker, I believe my DNS is OK. Green will point to the HOSTMANE domain, not the actual mailbox domain. If I set it to the actual mailbox domain, the mailcow DNS check (Current State column) will show it as not correct.
touch data/assets/ssl/force_renew
docker-compose restart acme-mailcow
docker-compose logs --tail=200 -f acme-mailcow
After a certificate creation, I only have one folder created.
/opt/mailcow-dockerized/data/assets/ssl/mail.domain1.com
Should there be a separate folder for other domains or only for the hostname domain?
root@mailcow:/opt/mailcow-dockerized# docker-compose logs --tail=200 -f acme-mailcow
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Waiting for Docker API...
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Docker API OK
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Waiting for Postfix...
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Postfix OK
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Waiting for Dovecot...
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Dovecot OK
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Waiting for database...
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Database OK
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Waiting for Nginx...
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Nginx OK
acme-mailcow-1 | Tue May 27 09:04:21 CEST 2025 - Waiting for resolver...
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - Resolver OK
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - Waiting for domain table...
acme-mailcow-1 | OK
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - Initializing, please wait...
acme-mailcow-1 | Could not find certificate from <stdin>
acme-mailcow-1 | Could not find certificate from <stdin>
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - Using existing domain rsa key /var/lib/acme/acme/key.pem
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - Using existing Lets Encrypt account key /var/lib/acme/acme/account.pem
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - No A or AAAA record found for hostname autodiscover.abc123
acme-mailcow-1 | Tue May 27 09:04:23 CEST 2025 - No A or AAAA record found for hostname autoconfig.abc123
acme-mailcow-1 | Tue May 27 09:04:28 CEST 2025 - No A or AAAA record found for hostname autodiscover.domain2.com
acme-mailcow-1 | Tue May 27 09:04:28 CEST 2025 - Found A record for autoconfig.domain2.com: 213.250.55.170
acme-mailcow-1 | (skipping check, returning 0)
acme-mailcow-1 | Tue May 27 09:04:28 CEST 2025 - Confirmed A record 213.250.55.170
acme-mailcow-1 | Tue May 27 09:04:32 CEST 2025 - No A or AAAA record found for hostname autodiscover.domain4.com
acme-mailcow-1 | Tue May 27 09:04:33 CEST 2025 - No A or AAAA record found for hostname autoconfig.domain4.com
acme-mailcow-1 | Tue May 27 09:04:34 CEST 2025 - No A or AAAA record found for hostname autodiscover.domain5.com
acme-mailcow-1 | Tue May 27 09:04:34 CEST 2025 - No A or AAAA record found for hostname autoconfig.domain5.com
acme-mailcow-1 | Tue May 27 09:04:34 CEST 2025 - Found A record for autodiscover.domain1.com: 213.250.55.170
acme-mailcow-1 | (skipping check, returning 0)
acme-mailcow-1 | Tue May 27 09:04:34 CEST 2025 - Confirmed A record 213.250.55.170
acme-mailcow-1 | Tue May 27 09:04:35 CEST 2025 - Found A record for autoconfig.domain1.com: 213.250.55.170
acme-mailcow-1 | (skipping check, returning 0)
acme-mailcow-1 | Tue May 27 09:04:35 CEST 2025 - Confirmed A record 213.250.55.170
acme-mailcow-1 | Tue May 27 09:04:35 CEST 2025 - No A or AAAA record found for hostname autodiscover.domain3.com
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - No A or AAAA record found for hostname autoconfig.domain3.com
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Found A record for mail.domain1.com: 213.250.55.170
acme-mailcow-1 | (skipping check, returning 0)
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Confirmed A record 213.250.55.170
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Certificate /var/lib/acme/mail.domain1.com/cert.pem missing or changed domains 'mail.domain1.com autoconfig.domain2.com autoconfig.domain1.com autodiscover.domain1.com' - start obtaining
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Creating backups in /var/lib/acme/backups/mail.domain1.com/2025-05-27_09_04_36 ...
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Checking resolver...
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Resolver OK
acme-mailcow-1 | Tue May 27 09:04:36 CEST 2025 - Using command acme-tiny --account-key /var/lib/acme/acme/account.pem --disable-check --csr /var/lib/acme/mail.domain1.com/acme.csr --acme-dir /var/www/acme/
acme-mailcow-1 | Parsing account key...
acme-mailcow-1 | Parsing CSR...
acme-mailcow-1 | Found domains: mail.domain1.com, autoconfig.domain2.com, autoconfig.domain1.com, autodiscover.domain1.com
acme-mailcow-1 | Getting directory...
acme-mailcow-1 | Directory found!
acme-mailcow-1 | Registering account...
acme-mailcow-1 | Already registered! Account ID: https://acme-v02.api.letsencrypt.org/acme/acct/2418718437
acme-mailcow-1 | Creating new order...
acme-mailcow-1 | Order created!
acme-mailcow-1 | Already verified: autoconfig.domain2.com, skipping...
acme-mailcow-1 | Already verified: autoconfig.domain1.com, skipping...
acme-mailcow-1 | Already verified: autodiscover.domain1.com, skipping...
acme-mailcow-1 | Already verified: mail.domain1.com, skipping...
acme-mailcow-1 | Signing certificate...
acme-mailcow-1 | Certificate signed!
acme-mailcow-1 | Tue May 27 09:04:52 CEST 2025 - Deploying certificate /var/lib/acme/mail.domain1.com/cert.pem...
acme-mailcow-1 | Tue May 27 09:04:52 CEST 2025 - Verified hashes.
acme-mailcow-1 | Tue May 27 09:04:52 CEST 2025 - Certificate successfully obtained
acme-mailcow-1 | Tue May 27 09:04:52 CEST 2025 - Reloading or restarting services... (1)
acme-mailcow-1 | Reloading Nginx...
acme-mailcow-1 | Restarting cb62279e62ff0727a8e36baf331aecfc45e27c7d07e4fa6d93263b6f695d60b6...
acme-mailcow-1 | command completed successfully
acme-mailcow-1 | Restarting ccb9da3d9c602ddc66e4e1a36e13bd2eb7bf2a53298c5e145fb82e10b53f71d6...
acme-mailcow-1 | command completed successfully
acme-mailcow-1 | Tue May 27 09:04:57 CEST 2025 - Waiting for containers to settle...
acme-mailcow-1 | Tue May 27 09:05:07 CEST 2025 - Certificates were successfully renewed where required, sleeping for another day.
Logs seem fine, but GUI for second domain is still unsecured.

Thank you for your help!